PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G170700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 106aa    MW: 12365.1 Da    PI: 9.3891
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G170700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.4e-1730102172
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 
                         k+Yn+YA   GF vrk+  +++  ++   +r f Cskeg+r+ ++ + t+++r++ra +r+gCka+l++k++ 
  Brast05G170700.1.p  30 KYYNSYALLKGFGVRKEDLERKPGTNIAFRRLFSCSKEGYRAVKHFNaTNRKRQPRALSRCGCKARLEIKLHM 102
                         69********************999999**************999886899999***************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1630101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEPGGVSLED LEEYYMVVNQ TFRSEEEGYK YYNSYALLKG FGVRKEDLER KPGTNIAFRR  60
LFSCSKEGYR AVKHFNATNR KRQPRALSRC GCKARLEIKL HMESGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751828.12e-64PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3NZR57e-63A0A0Q3NZR5_BRADI; Uncharacterized protein
TrEMBLI1H8V61e-61I1H8V6_BRADI; Uncharacterized protein
STRINGBRADI1G72190.14e-61(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-12FAR1-related sequence 5